Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01946.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2730
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:2566 original size:15 final size:15

Alignment explanation


    Indices: 2546--2578  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       2536 CATTAATGTC

                           
       2546 TTTCATTCATCCTTA
          1 TTTCATTCATCCTTA

                           
       2561 TTTCATTCATCCTTA
          1 TTTCATTCATCCTTA

               
       2576 TTT
          1 TTT

       2579 TGTTCTTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58


Consensus pattern (15 bp):   
TTTCATTCATCCTTA
Done.