Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01756.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26


Found at i:642 original size:3 final size:3

Alignment explanation


    Indices: 636--676  Score: 73
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        626 ACAACAAGAA

                                                  *               
        636 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAA GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA

        677 AGATGAGGAT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00


Consensus pattern (3 bp):   
GAG

Found at i:677 original size:12 final size:12

Alignment explanation


    Indices: 636--685  Score: 73
    Period size: 12  Copynumber: 4.2  Consensus size: 12

        626 ACAACAAGAA

                 *      
        636 GAGGAGGAGGAG
          1 GAGGAAGAGGAG

                 *      
        648 GAGGAGGAGGAG
          1 GAGGAAGAGGAG

                        
        660 GAGGAAGAGGAG
          1 GAGGAAGAGGAG

                    *   
        672 GAGGAAGATGAG
          1 GAGGAAGAGGAG

              
        684 GA
          1 GA

        686 TGAAATGAAA


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   36  1.00

ACGTcount: A:0.38, C:0.00, G:0.60, T:0.02


Consensus pattern (12 bp):   
GAGGAAGAGGAG

Done.