Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01760.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4673
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:1486 original size:43 final size:43

Alignment explanation


    Indices: 1425--1508  Score: 141
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1415 CTCAACTTCT

                      *                     *          
       1425 AAATTAACCTGAACGACAACGTTTCCTAACTTTGACTAATTTA
          1 AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATTTA

                                     *               
       1468 AAATTAACCTAAACGACAACGTTTCGTAACTTAGACTAATT
          1 AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATT

       1509 GACTTGGAAT


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  43   38  1.00

ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31


Consensus pattern (43 bp):   
AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATTTA

Found at i:1817 original size:16 final size:17

Alignment explanation


    Indices: 1786--1819  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       1776 TCTCCACCCA

                  *          
       1786 CCTCAACTCTCCTCCTC
          1 CCTCAAATCTCCTCCTC

                             
       1803 CCTCAAATC-CCTCCTC
          1 CCTCAAATCTCCTCCTC

             
       1819 C
          1 C

       1820 TTTCCCTTTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.15, C:0.59, G:0.00, T:0.26


Consensus pattern (17 bp):   
CCTCAAATCTCCTCCTC
Done.