Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01948.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:542 original size:11 final size:10

Alignment explanation


    Indices: 514--543  Score: 51
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        504 CTTCAGCTGA

                      
        514 ATTTGCAAGG
          1 ATTTGCAAGG

                      
        524 ATTTGCAAGG
          1 ATTTGCAAGG

                      
        534 ATCTTGCAAG
          1 AT-TTGCAAG

        544 CATTGGTGAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10   12  0.63
  11    7  0.37

ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30


Consensus pattern (10 bp):   
ATTTGCAAGG
Done.