Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01770.N14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35


Found at i:157 original size:9 final size:9

Alignment explanation


    Indices: 146--186  Score: 64
    Period size: 9  Copynumber: 4.6  Consensus size: 9

        136 GGATGAGGAT

                    *
        146 GAAGAAGAT
          1 GAAGAAGAC

                     
        155 GAAGAAGAC
          1 GAAGAAGAC

                    *
        164 GAAGAAGAA
          1 GAAGAAGAC

                     
        173 GAAGAAGAC
          1 GAAGAAGAC

                 
        182 GAAGA
          1 GAAGA

        187 CGAAGATGAA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   29  1.00

ACGTcount: A:0.59, C:0.05, G:0.34, T:0.02


Consensus pattern (9 bp):   
GAAGAAGAC

Found at i:158 original size:6 final size:6

Alignment explanation


    Indices: 146--197  Score: 59
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        136 GGATGAGGAT

                     *         *                    *      *      *
        146 GAAGAA GATGAA GAAGAC GAAGAA GAAGAA GAAGAC GAAGAC GAAGAT
          1 GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA

                
        194 GAAG
          1 GAAG

        198 CCGACGCCGA


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.56, C:0.06, G:0.35, T:0.04


Consensus pattern (6 bp):   
GAAGAA

Done.