Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01772.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2959
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35


Found at i:1688 original size:27 final size:27

Alignment explanation


    Indices: 1650--1706  Score: 96
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1640 CAGTTATCTA

                                  *    
       1650 TTTTCCTTTTCATCTGATCCTTTAAGC
          1 TTTTCCTTTTCATCTGATCCTTGAAGC

                           *           
       1677 TTTTCCTTTTCATCTTATCCTTGAAGC
          1 TTTTCCTTTTCATCTGATCCTTGAAGC

               
       1704 TTT
          1 TTT

       1707 GAAAAGAGGG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.14, C:0.25, G:0.07, T:0.54


Consensus pattern (27 bp):   
TTTTCCTTTTCATCTGATCCTTGAAGC
Done.