Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01775.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31


Found at i:337 original size:42 final size:42

Alignment explanation


    Indices: 278--364  Score: 174
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        268 AAACTCTCTC

                                                      
        278 GTTAGTTTTTAATAATGAGAAAGACAATTCAACCTAATTGTG
          1 GTTAGTTTTTAATAATGAGAAAGACAATTCAACCTAATTGTG

                                                      
        320 GTTAGTTTTTAATAATGAGAAAGACAATTCAACCTAATTGTG
          1 GTTAGTTTTTAATAATGAGAAAGACAATTCAACCTAATTGTG

               
        362 GTT
          1 GTT

        365 TATTCTAGAC


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   45  1.00

ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37


Consensus pattern (42 bp):   
GTTAGTTTTTAATAATGAGAAAGACAATTCAACCTAATTGTG
Done.