Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01834.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3986
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:23 original size:6 final size:6

Alignment explanation


    Indices: 14--53  Score: 62
    Period size: 6  Copynumber: 6.7  Consensus size: 6

          4 AAAAAAAAAA

                           **                             
         14 CTCATT CTCATT CAAATT CTCATT CTCATT CTCATT CTCA
          1 CTCATT CTCATT CTCATT CTCATT CTCATT CTCATT CTCA

         54 ACCGAAAAGT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.23, C:0.33, G:0.00, T:0.45


Consensus pattern (6 bp):   
CTCATT

Done.