Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01834.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5339
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:4144 original size:32 final size:32

Alignment explanation


    Indices: 4102--4168  Score: 107
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       4092 GAGGTAGGTC

                                  *         
       4102 TTGAGATGTCAATTCGTTTACTGAAGCATTTT
          1 TTGAGATGTCAATTCGTTTACTAAAGCATTTT

                *              *            
       4134 TTGATATGTCAATTCGTTTGCTAAAGCATTTT
          1 TTGAGATGTCAATTCGTTTACTAAAGCATTTT

               
       4166 TTG
          1 TTG

       4169 CAGAATGGTG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46


Consensus pattern (32 bp):   
TTGAGATGTCAATTCGTTTACTAAAGCATTTT

Found at i:4363 original size:3 final size:3

Alignment explanation


    Indices: 4355--4416  Score: 106
    Period size: 3  Copynumber: 20.7  Consensus size: 3

       4345 TATTGATATT

                                          *         *                      
       4355 TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG CTG TTG TTG TTG TTG TTG
          1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG

                              
       4403 TTG TTG TTG TTG TT
          1 TTG TTG TTG TTG TT

       4417 ATGATACGCC


Statistics
Matches: 55,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   55  1.00

ACGTcount: A:0.02, C:0.02, G:0.31, T:0.66


Consensus pattern (3 bp):   
TTG

Done.