Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01870.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1446
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26


Found at i:618 original size:21 final size:20

Alignment explanation


    Indices: 592--631  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        582 ATGAAAAAGC

                                 
        592 CCAATGCTGCTATTCGAGATG
          1 CCAATGCTGCT-TTCGAGATG

                         *     
        613 CCAATGCTGCTTTGGAGAT
          1 CCAATGCTGCTTTCGAGAT

        632 AAACCCAGAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30


Consensus pattern (20 bp):   
CCAATGCTGCTTTCGAGATG

Found at i:956 original size:12 final size:12

Alignment explanation


    Indices: 939--1016  Score: 93
    Period size: 12  Copynumber: 6.5  Consensus size: 12

        929 CAGTAGAAAA

                        
        939 CCTGGAGGTATG
          1 CCTGGAGGTATG

                        
        951 CCTGGAGGTATG
          1 CCTGGAGGTATG

              *         
        963 CCCGGAGGTATG
          1 CCTGGAGGTATG

                     * *
        975 CCTGGAGGTTTT
          1 CCTGGAGGTATG

                    *   
        987 CCTGGAGGCATG
          1 CCTGGAGGTATG

              *  *  *   
        999 CCAGGTGGCATG
          1 CCTGGAGGTATG

                  
       1011 CCTGGA
          1 CCTGGA

       1017 AATGTTGATT


Statistics
Matches: 55,  Mismatches: 11, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   55  1.00

ACGTcount: A:0.15, C:0.22, G:0.40, T:0.23


Consensus pattern (12 bp):   
CCTGGAGGTATG

Done.