Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01886.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3260
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:1504 original size:26 final size:28

Alignment explanation


    Indices: 1451--1506  Score: 71
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       1441 TTTTTTTTTT

                 *    *          *      
       1451 ATATTTATTATTTCTCTCATTTTAGTTC
          1 ATATTGATTACTTCTCTCATTGTAGTTC

                                        
       1479 ATATTGATTACTTCTCT-ATTGT-GTTC
          1 ATATTGATTACTTCTCTCATTGTAGTTC

              
       1505 AT
          1 AT

       1507 TTTGTGGTTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  26    6  0.24
  27    4  0.16
  28   15  0.60

ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57


Consensus pattern (28 bp):   
ATATTGATTACTTCTCTCATTGTAGTTC
Done.