Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01891.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 962

Length: 1604
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28


Found at i:1494 original size:15 final size:15

Alignment explanation


    Indices: 1474--1503  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1464 TCATCATCTC

                           
       1474 CTTAGTGTTTAAATT
          1 CTTAGTGTTTAAATT

                           
       1489 CTTAGTGTTTAAATT
          1 CTTAGTGTTTAAATT

       1504 TAAGTAGGTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53


Consensus pattern (15 bp):   
CTTAGTGTTTAAATT
Done.