Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01900.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2274
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33


Found at i:110 original size:13 final size:13

Alignment explanation


    Indices: 92--116  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         82 AAAAAAAAAA

                         
         92 AAAAAGAATTTTC
          1 AAAAAGAATTTTC

                        
        105 AAAAAGAATTTT
          1 AAAAAGAATTTT

        117 GGTAGCCCTC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.04, G:0.08, T:0.32


Consensus pattern (13 bp):   
AAAAAGAATTTTC
Done.