Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01904.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:130 original size:21 final size:21

Alignment explanation


    Indices: 104--144  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         94 AGTAGTATTG

                                 
        104 ATTAAGTAGTATTGCATTTTA
          1 ATTAAGTAGTATTGCATTTTA

                    *     *     
        125 ATTAAGTATTATTGTATTTT
          1 ATTAAGTAGTATTGCATTTT

        145 TGGATGGTTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54


Consensus pattern (21 bp):   
ATTAAGTAGTATTGCATTTTA
Done.