Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01932.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2677
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27


Found at i:1893 original size:40 final size:40

Alignment explanation


    Indices: 1838--1918  Score: 153
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1828 TCATTCCCGC

                                                    
       1838 TAGGAAATCCCATTCAACTCGATCGTATACCTTACTCATA
          1 TAGGAAATCCCATTCAACTCGATCGTATACCTTACTCATA

                                        *           
       1878 TAGGAAATCCCATTCAACTCGATCGTATGCCTTACTCATA
          1 TAGGAAATCCCATTCAACTCGATCGTATACCTTACTCATA

             
       1918 T
          1 T

       1919 CGAGTTTTAG


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31


Consensus pattern (40 bp):   
TAGGAAATCCCATTCAACTCGATCGTATACCTTACTCATA
Done.