Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01967.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 428

Length: 714
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31


Found at i:691 original size:15 final size:14

Alignment explanation


    Indices: 666--703  Score: 58
    Period size: 14  Copynumber: 2.6  Consensus size: 14

        656 GTTTGTCAAT

                          
        666 AAAATATTTTTTGG
          1 AAAATATTTTTTGG

                  *       
        680 AAAATAATTTTTGG
          1 AAAATATTTTTTGG

                      
        694 AAAATTATTT
          1 AAAA-TATTT

        704 GCTTCATTTC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  14   17  0.81
  15    4  0.19

ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47


Consensus pattern (14 bp):   
AAAATATTTTTTGG
Done.