Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01949.N46

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1786
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38


Found at i:1573 original size:25 final size:25

Alignment explanation


    Indices: 1545--1596  Score: 79
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1535 AATTTGATAT

                                      
       1545 TTCAGCA-AAGAAGGCATTGTTGAGA
          1 TTCAGCAGAA-AAGGCATTGTTGAGA

                        *            
       1570 TTCAGCAGAAAATGCATTGTTGAGA
          1 TTCAGCAGAAAAGGCATTGTTGAGA

              
       1595 TT
          1 TT

       1597 TGCAAACTCA


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  25   23  0.92
  26    2  0.08

ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29


Consensus pattern (25 bp):   
TTCAGCAGAAAAGGCATTGTTGAGA
Done.