Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02010.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1621
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34


Found at i:1525 original size:31 final size:31

Alignment explanation


    Indices: 1448--1525  Score: 86
    Period size: 31  Copynumber: 2.5  Consensus size: 31

       1438 TTATTTTTAT

                *          *               
       1448 AAGAAAATTTGTTGAATATTTTTTAGGTTCA
          1 AAGACAATTTGTTGATTATTTTTTAGGTTCA

                              *      ***    
       1479 AA-ACGAATTTGTTGATTTTTTTTTCTTTTCA
          1 AAGAC-AATTTGTTGATTATTTTTTAGGTTCA

                            
       1510 AAGACAATTTGTTGAT
          1 AAGACAATTTGTTGAT

       1526 AAATTAGAAA


Statistics
Matches: 39,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
  30    1  0.03
  31   36  0.92
  32    2  0.05

ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49


Consensus pattern (31 bp):   
AAGACAATTTGTTGATTATTTTTTAGGTTCA
Done.