Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02031.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34


Found at i:117 original size:13 final size:13

Alignment explanation


    Indices: 99--123  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         89 TTCATGGCGG

                         
         99 AACCCAAAAATTA
          1 AACCCAAAAATTA

                        
        112 AACCCAAAAATT
          1 AACCCAAAAATT

        124 TCCCCCAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16


Consensus pattern (13 bp):   
AACCCAAAAATTA

Found at i:386 original size:8 final size:8

Alignment explanation


    Indices: 374--405  Score: 55
    Period size: 8  Copynumber: 4.0  Consensus size: 8

        364 TAAGACTGAG

                   *
        374 TTGAATCG
          1 TTGAATCA

                    
        382 TTGAATCA
          1 TTGAATCA

                    
        390 TTGAATCA
          1 TTGAATCA

                    
        398 TTGAATCA
          1 TTGAATCA

        406 GTGGAAAGGG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38


Consensus pattern (8 bp):   
TTGAATCA

Done.