Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02075.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4975
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:3398 original size:21 final size:21

Alignment explanation


    Indices: 3239--3391  Score: 261
    Period size: 21  Copynumber: 7.3  Consensus size: 21

       3229 GCTACAGAAG

                           *     
       3239 AAGAAGAAAAGGACAGTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                    *            
       3260 AAGAAGAAGAGGACATTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                                 
       3281 AAGAAGAAAAGGACATTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                                 
       3302 AAGAAGAAAAGGACATTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                          *      
       3323 AAGAAGAAAAGGACGTTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                               * 
       3344 AAGAAGAAAAGGACATTGGGA
          1 AAGAAGAAAAGGACATTGGAA

                           *     
       3365 AAGAAGAAAAGGACAGTGGAA
          1 AAGAAGAAAAGGACATTGGAA

                  
       3386 AAGAAG
          1 AAGAAG

       3392 TCAAGGAACC


Statistics
Matches: 124,  Mismatches: 8, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21  124  1.00

ACGTcount: A:0.56, C:0.05, G:0.32, T:0.08


Consensus pattern (21 bp):   
AAGAAGAAAAGGACATTGGAA

Done.