Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02076.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1852
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37


Found at i:1199 original size:29 final size:29

Alignment explanation


    Indices: 1166--1232  Score: 71
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1156 ATAAGGATCT

                      *   *    *       * 
       1166 GATCAAATTAGTCTCTCTATTATTAAATA
          1 GATCAAATTAATCTATCTAATATTAAAAA

                  *         *            
       1195 GATCAATTTAATCTATGTAATATTAAAAA
          1 GATCAAATTAATCTATCTAATATTAAAAA

                     
       1224 GAATCAAAT
          1 G-ATCAAAT

       1233 AAGGCCAAAT


Statistics
Matches: 30,  Mismatches: 7, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  29   24  0.80
  30    6  0.20

ACGTcount: A:0.45, C:0.10, G:0.07, T:0.37


Consensus pattern (29 bp):   
GATCAAATTAATCTATCTAATATTAAAAA
Done.