Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02076.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4225
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:3572 original size:29 final size:29

Alignment explanation


    Indices: 3539--3605  Score: 71
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       3529 ATAAGGATCT

                      *   *    *       * 
       3539 GATCAAATTAGTCTCTCTATTATTAAATA
          1 GATCAAATTAATCTATCTAATATTAAAAA

                  *         *            
       3568 GATCAATTTAATCTATGTAATATTAAAAA
          1 GATCAAATTAATCTATCTAATATTAAAAA

                     
       3597 GAATCAAAT
          1 G-ATCAAAT

       3606 AAGGCCAAAT


Statistics
Matches: 30,  Mismatches: 7, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  29   24  0.80
  30    6  0.20

ACGTcount: A:0.45, C:0.10, G:0.07, T:0.37


Consensus pattern (29 bp):   
GATCAAATTAATCTATCTAATATTAAAAA
Done.