Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02082.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34


Found at i:171 original size:25 final size:25

Alignment explanation


    Indices: 134--203  Score: 72
    Period size: 25  Copynumber: 2.8  Consensus size: 25

        124 CACTGTTAAA

                    *             **  
        134 TTTTTTTTATTTAACTTTTAT-TTTG
          1 TTTTTTTTTTTTAACTTTT-TCACTG

                                     
        159 TTTTTTTTTTTT-ACTTTTTCACTG
          1 TTTTTTTTTTTTAACTTTTTCACTG

                 *               
        183 TTTTACTTTTTTTAACTTTTT
          1 TTTT-TTTTTTTTAACTTTTT

        204 TTAGTCTTCG


Statistics
Matches: 38,  Mismatches: 4, Indels: 5
        0.81            0.09        0.11

Matches are distributed among these distances:
  23    1  0.03
  24   12  0.32
  25   18  0.47
  26    7  0.18

ACGTcount: A:0.13, C:0.09, G:0.03, T:0.76


Consensus pattern (25 bp):   
TTTTTTTTTTTTAACTTTTTCACTG
Done.