Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02091.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3022
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:228 original size:14 final size:14

Alignment explanation


    Indices: 194--227  Score: 61
    Period size: 13  Copynumber: 2.5  Consensus size: 14

        184 TAATATTTTA

                          
        194 TTTTTTTCTAGGTT
          1 TTTTTTTCTAGGTT

                          
        208 TTTTTTTCTA-GTT
          1 TTTTTTTCTAGGTT

                   
        221 TTTTTTT
          1 TTTTTTT

        228 TAATTTTTGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13   10  0.50
  14   10  0.50

ACGTcount: A:0.06, C:0.06, G:0.09, T:0.79


Consensus pattern (14 bp):   
TTTTTTTCTAGGTT

Found at i:234 original size:12 final size:13

Alignment explanation


    Indices: 194--235  Score: 50
    Period size: 13  Copynumber: 3.2  Consensus size: 13

        184 TAATATTTTA

                       *  
        194 TTTTTTTCTAGGTT
          1 TTTTTTTCTA-ATT

                      *  
        208 TTTTTTTCTAGTT
          1 TTTTTTTCTAATT

                         
        221 TTTTTTT-TAATT
          1 TTTTTTTCTAATT

               
        233 TTT
          1 TTT

        236 GTCGCTTGGT


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  12    7  0.26
  13   10  0.37
  14   10  0.37

ACGTcount: A:0.10, C:0.05, G:0.07, T:0.79


Consensus pattern (13 bp):   
TTTTTTTCTAATT
Done.