Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33


Found at i:921 original size:42 final size:44

Alignment explanation


    Indices: 849--932  Score: 118
    Period size: 42  Copynumber: 2.0  Consensus size: 44

        839 AAGATTTTCA

                    *        *                          
        849 TGTTTTCTTGTTTTGCTTGAACTTTAATTTATCGTGTTGGTTAT
          1 TGTTTTCTGGTTTTGCTAGAACTTTAATTTATCGTGTTGGTTAT

                                *           *         
        893 TGTTTT-TGGTTTTGCTAGAGC-TTAATTTATTGTGTTGGTT
          1 TGTTTTCTGGTTTTGCTAGAACTTTAATTTATCGTGTTGGTT

        933 TTTATTATCT


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  42   18  0.50
  43   12  0.33
  44    6  0.17

ACGTcount: A:0.13, C:0.07, G:0.21, T:0.58


Consensus pattern (44 bp):   
TGTTTTCTGGTTTTGCTAGAACTTTAATTTATCGTGTTGGTTAT
Done.