Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02111.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 446

Length: 744
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.31


Found at i:374 original size:27 final size:27

Alignment explanation


    Indices: 344--462  Score: 193
    Period size: 27  Copynumber: 4.4  Consensus size: 27

        334 TGGTGGTTTG

                                *   *  
        344 GGTGGACTTGGAGGAACCGGAGGATTC
          1 GGTGGACTTGGAGGAACCGGTGGAGTC

                                    *  
        371 GGTGGACTTGGAGGAACCGGTGGATTC
          1 GGTGGACTTGGAGGAACCGGTGGAGTC

                          *            
        398 GGTGGACTTGGAGGTACCGGTGGAGTC
          1 GGTGGACTTGGAGGAACCGGTGGAGTC

                                       
        425 GGTGGACTTGGAGGAACCGGTGGAGTC
          1 GGTGGACTTGGAGGAACCGGTGGAGTC

                  *    
        452 GGTGGATTTGG
          1 GGTGGACTTGG

        463 TGGTGCTGGT


Statistics
Matches: 87,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  27   87  1.00

ACGTcount: A:0.18, C:0.13, G:0.47, T:0.22


Consensus pattern (27 bp):   
GGTGGACTTGGAGGAACCGGTGGAGTC

Found at i:475 original size:12 final size:12

Alignment explanation


    Indices: 460--503  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

        450 TCGGTGGATT

                        
        460 TGGTGGTGCTGG
          1 TGGTGGTGCTGG

                         
        472 TGGTGGTG-TAGG
          1 TGGTGGTGCT-GG

                  *     
        484 TGGTGGCGCTGG
          1 TGGTGGTGCTGG

              *     
        496 TGCTGGTG
          1 TGGTGGTG

        504 GTGGAGTAGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  11    1  0.04
  12   25  0.93
  13    1  0.04

ACGTcount: A:0.02, C:0.09, G:0.57, T:0.32


Consensus pattern (12 bp):   
TGGTGGTGCTGG
Done.