Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01952.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1648
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Found at i:1225 original size:42 final size:42

Alignment explanation


    Indices: 1048--1210  Score: 238
    Period size: 42  Copynumber: 3.9  Consensus size: 42

       1038 CGCAGGTGGA

                                   *               *  
       1048 ACCGTTCCTACTCACCTGATGATGGATACTATAGAAGGCTGG
          1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG

                   *               *                   
       1090 ACCGTTCTTA-TACACCTGATGAACGATACTATAGAAGGCGGG
          1 ACCGTTCCTACT-CACCTGATGATCGATACTATAGAAGGCGGG

             *                 *           *          
       1132 ATCGTTCCTACTCACCTGACGATCGATACTACAGAAGGCGGG
          1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG

              *                                  
       1174 ACTGTTCCTACTCACCTGATGATCGATACTATAGAAG
          1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAG

       1211 AAATGACCGG


Statistics
Matches: 106,  Mismatches: 13, Indels: 4
        0.86            0.11        0.03

Matches are distributed among these distances:
  41    1  0.01
  42  104  0.98
  43    1  0.01

ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25


Consensus pattern (42 bp):   
ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG

Done.