Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02121.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22475
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:3691 original size:23 final size:23

Alignment explanation


    Indices: 3634--3691  Score: 82
    Period size: 23  Copynumber: 2.5  Consensus size: 23

       3624 TTGAATTAGG

                                   
       3634 TATGTTTATAATTCGGACTTGAA
          1 TATGTTTATAATTCGGACTTGAA

               *         *         
       3657 TATATTTATAATTGGGACTTGAA
          1 TATGTTTATAATTCGGACTTGAA

                         
       3680 TGATGTTT-TAAT
          1 T-ATGTTTATAAT

       3692 GATATGTTTT


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  23   26  0.84
  24    5  0.16

ACGTcount: A:0.31, C:0.05, G:0.17, T:0.47


Consensus pattern (23 bp):   
TATGTTTATAATTCGGACTTGAA

Found at i:14888 original size:36 final size:36

Alignment explanation


    Indices: 14817--14888  Score: 99
    Period size: 36  Copynumber: 2.0  Consensus size: 36

      14807 TGGGGATAGG

                 *       *              * *     
      14817 TTATTTCGTAGATTTTAGTGGTGGTATAGGGATGAA
          1 TTATTCCGTAGATGTTAGTGGTGGTATAAGAATGAA

                               *                
      14853 TTATTCCGTAGATGTTAGTTGTGGTATAAGAATGAA
          1 TTATTCCGTAGATGTTAGTGGTGGTATAAGAATGAA

      14889 CATTAATGAG


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.28, C:0.04, G:0.28, T:0.40


Consensus pattern (36 bp):   
TTATTCCGTAGATGTTAGTGGTGGTATAAGAATGAA
Done.