Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01954.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 429

Length: 716
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:526 original size:27 final size:27

Alignment explanation


    Indices: 488--543  Score: 94
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        478 GTCGTCATTC

                         *             
        488 CTTGTATGGTAATGAATCTAGCAAACT
          1 CTTGTATGGTAATCAATCTAGCAAACT

                 *                     
        515 CTTGTTTGGTAATCAATCTAGCAAACT
          1 CTTGTATGGTAATCAATCTAGCAAACT

              
        542 CT
          1 CT

        544 AGTCCAGTGC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Consensus pattern (27 bp):   
CTTGTATGGTAATCAATCTAGCAAACT
Done.