Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02135.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1834
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:992 original size:84 final size:84

Alignment explanation


    Indices: 851--1061  Score: 296
    Period size: 84  Copynumber: 2.5  Consensus size: 84

        841 TAGCTTCGAC

                 *    *         *                          *          *      
        851 GAAACTATCATTAATGAAAGTAGCAATCAACATAATATAGTTGTTGCGGAAAAGGGCATCGAAAC
          1 GAAACCATCACTAATGAAAGAAGCAATCAACATAATATAGTTGTTGCAGAAAAGGGCACCGAAAC

                               
        916 GCCCATCATTAGCTATGAT
         66 GCCCATCATTAGCTATGAT

                                                          *    **           *
        935 GAAACCATCACTAATGAAAGAAGCAATCAACATAATATAGTTGTTGTAGAAGGGGGCACCGAAAT
          1 GAAACCATCACTAATGAAAGAAGCAATCAACATAATATAGTTGTTGCAGAAAAGGGCACCGAAAC

             * **              
       1000 GTCTGTCATTAGCTATGAT
         66 GCCCATCATTAGCTATGAT

                  *  *                                 
       1019 GAAACCGTCGCTAATGAAAGAAGCAATCAACATAATATAGTTG
          1 GAAACCATCACTAATGAAAGAAGCAATCAACATAATATAGTTG

       1062 ATGTGGATGA


Statistics
Matches: 113,  Mismatches: 14, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  84  113  1.00

ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24


Consensus pattern (84 bp):   
GAAACCATCACTAATGAAAGAAGCAATCAACATAATATAGTTGTTGCAGAAAAGGGCACCGAAAC
GCCCATCATTAGCTATGAT
Done.