Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02137.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30


Found at i:15 original size:7 final size:7

Alignment explanation


    Indices: 4--38  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

          1 CCA

                 * 
          4 TCACTTT
          1 TCACTCT

                   
         11 TCACTCT
          1 TCACTCT

                   
         18 TCACTCT
          1 TCACTCT

                   
         25 TCACTCT
          1 TCACTCT

                   
         32 TCACTCT
          1 TCACTCT

         39 CCCATATATA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   27  1.00

ACGTcount: A:0.14, C:0.40, G:0.00, T:0.46


Consensus pattern (7 bp):   
TCACTCT

Done.