Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02143.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3994
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:2916 original size:23 final size:23

Alignment explanation


    Indices: 2890--2939  Score: 100
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       2880 AAAAAAGAAG

                                   
       2890 AACACACAATGGAAGCAAAACAA
          1 AACACACAATGGAAGCAAAACAA

                                   
       2913 AACACACAATGGAAGCAAAACAA
          1 AACACACAATGGAAGCAAAACAA

                
       2936 AACA
          1 AACA

       2940 GTTCCATTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   27  1.00

ACGTcount: A:0.62, C:0.22, G:0.12, T:0.04


Consensus pattern (23 bp):   
AACACACAATGGAAGCAAAACAA
Done.