Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 502

Length: 837
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26


Found at i:206 original size:33 final size:33

Alignment explanation


    Indices: 169--371  Score: 370
    Period size: 33  Copynumber: 6.2  Consensus size: 33

        159 AGCCCCAGCC

                                             
        169 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                                             
        202 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                               *           * 
        235 CCAGCCCCTTCACCCGGTATACACTCGCCCGAG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                 *                           
        268 CCAGCTCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                                             
        301 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                          *                  
        334 CCAGCCCCTTCACCTGGTACACACTCGCCCGCG
          1 CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

                 
        367 CCAGC
          1 CCAGC

        372 ACCATTTAAT


Statistics
Matches: 163,  Mismatches: 7, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  33  163  1.00

ACGTcount: A:0.16, C:0.53, G:0.18, T:0.13


Consensus pattern (33 bp):   
CCAGCCCCTTCACCCGGTACACACTCGCCCGCG

Done.