Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02166.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2691
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:2627 original size:13 final size:12

Alignment explanation


    Indices: 2609--2645  Score: 58
    Period size: 13  Copynumber: 3.1  Consensus size: 12

       2599 AAAACAGCTC

                         
       2609 TTTCTTTTTTCTT
          1 TTTCTTTTTT-TT

                        
       2622 TTTCTTTTTTTT
          1 TTTCTTTTTTTT

                        
       2634 TTT-TTTTTTTT
          1 TTTCTTTTTTTT

             
       2645 T
          1 T

       2646 GTATAGATGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  11    9  0.38
  12    5  0.21
  13   10  0.42

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (12 bp):   
TTTCTTTTTTTT
Done.