Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02196.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2919
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:758 original size:52 final size:52

Alignment explanation


    Indices: 680--784  Score: 210
    Period size: 52  Copynumber: 2.0  Consensus size: 52

        670 TTATAGAAAA

                                                                
        680 ACTTGGTCTTATTTAGTTTAACAGATATTTGTTTTCTTACTTGCCGCGTTTG
          1 ACTTGGTCTTATTTAGTTTAACAGATATTTGTTTTCTTACTTGCCGCGTTTG

                                                                
        732 ACTTGGTCTTATTTAGTTTAACAGATATTTGTTTTCTTACTTGCCGCGTTTG
          1 ACTTGGTCTTATTTAGTTTAACAGATATTTGTTTTCTTACTTGCCGCGTTTG

             
        784 A
          1 A

        785 TTCTAGTAGT


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  52   53  1.00

ACGTcount: A:0.18, C:0.15, G:0.17, T:0.50


Consensus pattern (52 bp):   
ACTTGGTCTTATTTAGTTTAACAGATATTTGTTTTCTTACTTGCCGCGTTTG
Done.