Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02200.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 370

Length: 618
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27


Found at i:407 original size:33 final size:33

Alignment explanation


    Indices: 363--425  Score: 99
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        353 GGTGTCAGAC

                                *            
        363 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
          1 GCGTGGAGCGTGGTGACCAAAGCTGAGGGGCAT

                  *        *              
        396 GCGTGGGGCGTGGTGGCCAAAGCTGAGGGG
          1 GCGTGGAGCGTGGTGACCAAAGCTGAGGGG

        426 TATGGTACCT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.16, C:0.17, G:0.52, T:0.14


Consensus pattern (33 bp):   
GCGTGGAGCGTGGTGACCAAAGCTGAGGGGCAT
Done.