Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02215.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 992

Length: 1654
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28


Found at i:210 original size:12 final size:12

Alignment explanation


    Indices: 193--218  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        183 AAAGGCGATC

                        
        193 CCAAGTCCAAGA
          1 CCAAGTCCAAGA

                        
        205 CCAAGTCCAAGA
          1 CCAAGTCCAAGA

              
        217 CC
          1 CC

        219 GGCGGTTCCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08


Consensus pattern (12 bp):   
CCAAGTCCAAGA
Done.