Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02248.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:68 original size:12 final size:12

Alignment explanation


    Indices: 41--75  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

         31 TCTCCAAACT

                        
         41 ACAAAAA-AAAA
          1 ACAAAAACAAAA

                        
         52 A-AAAAACAAAA
          1 ACAAAAACAAAA

                        
         63 ACAAAAACAAAA
          1 ACAAAAACAAAA

             
         75 A
          1 A

         76 ATCTGAAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    5  0.23
  11    6  0.27
  12   11  0.50

ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00


Consensus pattern (12 bp):   
ACAAAAACAAAA
Done.