Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02256.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1679
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29


Found at i:117 original size:16 final size:17

Alignment explanation


    Indices: 98--129  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

         88 AAAGTCTTAC

                             
         98 AAAAAAAAAGA-AAAGA
          1 AAAAAAAAAGAGAAAGA

                            
        114 AAAAAAAAAGAGAAAG
          1 AAAAAAAAAGAGAAAG

        130 TGTTTGCTTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (17 bp):   
AAAAAAAAAGAGAAAGA

Done.