Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02274.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2157
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:1240 original size:12 final size:12

Alignment explanation


    Indices: 1223--1247  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1213 ACATTTTTGC

                        
       1223 TCATGAACATAG
          1 TCATGAACATAG

                        
       1235 TCATGAACATAG
          1 TCATGAACATAG

             
       1247 T
          1 T

       1248 GATTTCTTGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28


Consensus pattern (12 bp):   
TCATGAACATAG
Done.