Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02283.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 257

Length: 429
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28


Found at i:207 original size:43 final size:43

Alignment explanation


    Indices: 146--235  Score: 180
    Period size: 43  Copynumber: 2.1  Consensus size: 43

        136 GGTGTCAGAA

                                                       
        146 GGCTAGCATGGCAGTGCAAGTGGTGATGGGACAGAGAGCAGGT
          1 GGCTAGCATGGCAGTGCAAGTGGTGATGGGACAGAGAGCAGGT

                                                       
        189 GGCTAGCATGGCAGTGCAAGTGGTGATGGGACAGAGAGCAGGT
          1 GGCTAGCATGGCAGTGCAAGTGGTGATGGGACAGAGAGCAGGT

                
        232 GGCT
          1 GGCT

        236 GAACGGCTAG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   47  1.00

ACGTcount: A:0.24, C:0.14, G:0.44, T:0.17


Consensus pattern (43 bp):   
GGCTAGCATGGCAGTGCAAGTGGTGATGGGACAGAGAGCAGGT

Found at i:233 original size:22 final size:22

Alignment explanation


    Indices: 165--233  Score: 65
    Period size: 22  Copynumber: 3.2  Consensus size: 22

        155 GGCAGTGCAA

                                  
        165 GTGGTGATGGGACAGAGAGCAG
          1 GTGGTGATGGGACAGAGAGCAG

                                *   *
        187 GTGGCTAGCAT-GG-C--AGTGCAA
          1 GTGG-T-G-ATGGGACAGAGAGCAG

                                  
        208 GTGGTGATGGGACAGAGAGCAG
          1 GTGGTGATGGGACAGAGAGCAG

                
        230 GTGG
          1 GTGG

        234 CTGAACGGCT


Statistics
Matches: 36,  Mismatches: 4, Indels: 14
        0.67            0.07        0.26

Matches are distributed among these distances:
  18    2  0.06
  19    3  0.08
  20    2  0.06
  21    9  0.25
  22   13  0.36
  23    2  0.06
  24    3  0.08
  25    2  0.06

ACGTcount: A:0.25, C:0.12, G:0.48, T:0.16


Consensus pattern (22 bp):   
GTGGTGATGGGACAGAGAGCAG
Done.