Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02293.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 484

Length: 807
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:213 original size:21 final size:21

Alignment explanation


    Indices: 187--229  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        177 TCACATGGGT

                                 
        187 CCAACTAATCCAGGTGATATG
          1 CCAACTAATCCAGGTGATATG

                       *         
        208 CCAACTAATCCTGGTGATATG
          1 CCAACTAATCCAGGTGATATG

             
        229 C
          1 C

        230 TTTCTTCACC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26


Consensus pattern (21 bp):   
CCAACTAATCCAGGTGATATG
Done.