Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02306.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2101
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34


Found at i:1098 original size:105 final size:105

Alignment explanation


    Indices: 863--1176  Score: 317
    Period size: 105  Copynumber: 3.0  Consensus size: 105

        853 TGTGATATTG

                *         *    *      *       *     *   *   *       *        
        863 TCACATATAATATATTGATCGATGCACATTGTAAGGAGGGGATGATTTATAAAGCTGTAGATATC
          1 TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC

                 *      * *              *      *  *
        928 GTTGATACAATGGGGAAGCAAGGCATTGAACCTAATATTG
         66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA

                          * *              *                             * * 
        968 TCACGTATAATATATTTATTGATGCATATTGCAAAGAGGGAATGGTTTCTAAAGCTATAGAAACC
          1 TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC

            *                      *                
       1033 ATTGACACAATGAGAAAGCAAGGTATTGAGCCTAATGTTA
         66 GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA

                             *  *         *         *       *  *             
       1073 TCACGTATAATATACTGGTTTATGCATATTTTAACA-AGGCAATGGTTACTGAAGCTGA-AGATA
          1 TCACGTATAATATACTGATTGATGCATATTGTAA-AGAGGGAATGGTTTCTAAAGCT-ATAGATA

             *             *                   *     
       1136 TTGTTGACACAATGATAAAGCAAGGCATTGAGCCTGATGTT
         64 TCGTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTT

       1177 GTTACCTATA


Statistics
Matches: 171,  Mismatches: 36, Indels: 4
        0.81            0.17        0.02

Matches are distributed among these distances:
 105  169  0.99
 106    2  0.01

ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30


Consensus pattern (105 bp):   
TCACGTATAATATACTGATTGATGCATATTGTAAAGAGGGAATGGTTTCTAAAGCTATAGATATC
GTTGACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTA
Done.