Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02310.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4455
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36


Found at i:1247 original size:33 final size:33

Alignment explanation


    Indices: 1205--1271  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1195 CCTTTGTGGG

                                             
       1205 CAATGGCTATTTTCCAAGGAACTCCCCTCAGCT
          1 CAATGGCTATTTTCCAAGGAACTCCCCTCAGCT

                                             
       1238 CAATGGCTATTTTCCAAGGAACTCCCCTCAGCT
          1 CAATGGCTATTTTCCAAGGAACTCCCCTCAGCT

             
       1271 C
          1 C

       1272 TATCTATCGT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27


Consensus pattern (33 bp):   
CAATGGCTATTTTCCAAGGAACTCCCCTCAGCT
Done.