Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02312.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 753
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28


Found at i:480 original size:21 final size:21

Alignment explanation


    Indices: 456--497  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        446 AGGTGGTGGA

                        *        
        456 AGAGGTGGTCGTGGAGGAGGC
          1 AGAGGTGGTCGTAGAGGAGGC

                     *           
        477 AGAGGTGGTGGTAGAGGAGGC
          1 AGAGGTGGTCGTAGAGGAGGC

        498 GGTCGTGGAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.21, C:0.07, G:0.57, T:0.14


Consensus pattern (21 bp):   
AGAGGTGGTCGTAGAGGAGGC
Done.