Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02320.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3543
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:1349 original size:41 final size:41

Alignment explanation


    Indices: 1292--1374  Score: 157
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1282 TAATTAGGGG

                                                     
       1292 TTTCGAGTTATGGTAATGGGATTTAGATTGGGATATGCTGC
          1 TTTCGAGTTATGGTAATGGGATTTAGATTGGGATATGCTGC

                     *                               
       1333 TTTCGAGTTTTGGTAATGGGATTTAGATTGGGATATGCTGC
          1 TTTCGAGTTATGGTAATGGGATTTAGATTGGGATATGCTGC

             
       1374 T
          1 T

       1375 ACTGTTAACA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   41  1.00

ACGTcount: A:0.20, C:0.07, G:0.31, T:0.41


Consensus pattern (41 bp):   
TTTCGAGTTATGGTAATGGGATTTAGATTGGGATATGCTGC
Done.