Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02321.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3425
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:1405 original size:84 final size:86

Alignment explanation


    Indices: 1252--1424  Score: 251
    Period size: 84  Copynumber: 2.0  Consensus size: 86

       1242 GGGTCAAGTA

                               *                    * *                  *   
       1252 CTGGAACTGCAGAAGTGTTGCCTTCATTATCAGGTCCAAGTGGTGATTCTACTGTTAGTTCTTCA
          1 CTGGAACTGCAGAAGTGTTACCTTCATTATCAGGTCCAAGAGCTGATTCTACTGTTAGTTCCTCA

                                 
       1317 GGATTA-T-ATAGAGTGACCC
         66 GGATTACTAATAGAGTGACCC

                                                              **     *      *
       1336 CTGGAACTGCAGAAGTGTTACCTTCATTATCAGGTCCAAGAGCTGATTCTGGTGTTATTTCCTCT
          1 CTGGAACTGCAGAAGTGTTACCTTCATTATCAGGTCCAAGAGCTGATTCTACTGTTAGTTCCTCA

                                  
       1401 GGATTATCTAATAGAGTGACCC
         66 GGATTA-CTAATAGAGTGACCC

              
       1423 CT
          1 CT

       1425 AATCAGTTGG


Statistics
Matches: 78,  Mismatches: 8, Indels: 3
        0.88            0.09        0.03

Matches are distributed among these distances:
  84   63  0.81
  86    1  0.01
  87   14  0.18

ACGTcount: A:0.24, C:0.20, G:0.23, T:0.34


Consensus pattern (86 bp):   
CTGGAACTGCAGAAGTGTTACCTTCATTATCAGGTCCAAGAGCTGATTCTACTGTTAGTTCCTCA
GGATTACTAATAGAGTGACCC
Done.