Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02323.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 470

Length: 784
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29


Found at i:577 original size:38 final size:38

Alignment explanation


    Indices: 535--610  Score: 152
    Period size: 38  Copynumber: 2.0  Consensus size: 38

        525 TGAAAAAGAA

                                                  
        535 GAGGTGAAGTTGATGCTGTAACTTAGAGCCAATGTTTT
          1 GAGGTGAAGTTGATGCTGTAACTTAGAGCCAATGTTTT

                                                  
        573 GAGGTGAAGTTGATGCTGTAACTTAGAGCCAATGTTTT
          1 GAGGTGAAGTTGATGCTGTAACTTAGAGCCAATGTTTT

        611 CCAACACAAG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  38   38  1.00

ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34


Consensus pattern (38 bp):   
GAGGTGAAGTTGATGCTGTAACTTAGAGCCAATGTTTT
Done.