Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02326.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2721
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1303 original size:51 final size:51

Alignment explanation


    Indices: 1243--1344  Score: 186
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1233 GAAGTAGTTC

                              *        *                       
       1243 CCCTTTGCAGGTTTCTTCTTCTATCTTGAATCATTATCCAGACTCGAACTA
          1 CCCTTTGCAGGTTTCTTCCTCTATCTTCAATCATTATCCAGACTCGAACTA

                                                               
       1294 CCCTTTGCAGGTTTCTTCCTCTATCTTCAATCATTATCCAGACTCGAACTA
          1 CCCTTTGCAGGTTTCTTCCTCTATCTTCAATCATTATCCAGACTCGAACTA

       1345 GTGTTGAATA


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.22, C:0.29, G:0.11, T:0.38


Consensus pattern (51 bp):   
CCCTTTGCAGGTTTCTTCCTCTATCTTCAATCATTATCCAGACTCGAACTA
Done.