Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02331.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 345

Length: 576
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.36


Found at i:177 original size:18 final size:18

Alignment explanation


    Indices: 130--178  Score: 57
    Period size: 17  Copynumber: 2.7  Consensus size: 18

        120 TCAATGCAGT

                               
        130 GATTCTCTAAATTTGATTG
          1 GATTCTC-AAATTTGATTG

                *              
        149 GATTTTC-AATTTGAATTG
          1 GATTCTCAAATTTG-ATTG

                         
        167 G-TTCTCAAATTT
          1 GATTCTCAAATTT

        179 ACATGTTATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  17   10  0.38
  18   10  0.38
  19    6  0.23

ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49


Consensus pattern (18 bp):   
GATTCTCAAATTTGATTG
Done.